ExPASy is the SIB Bioinformatics Resource Portal which provides access to scientific databases and software tools (i.e., resources) in different areas of life sciences including proteomics, genomics, phylogeny, systems biology, population genetics, transcriptomics etc. (see Categories in the left menu). On this portal you find resources from many different SIB groups as well as external institutions.
Supporting COVID-19 / SARS-CoV-2 research
如何自己搭建梯子上外网
SIB experts and resources in the fight against COVID-19 (evolving list):
UniProtKB/Swiss-Prot: Knowledge of SARS-CoV-2 protein sequences and how they function
ViralZone: Biological insights, including a detailed comparison with the SARS virus’ genome as well as cross-links to complementary resources. View Webinar of 14 April 2020
STRING-covid: New COVID-19 oriented version enabling users to explore the host-side of the disease, while keeping a focus on putative COVID-19-interacting human proteins
Corona OMA Browser: Website with all the functionality of the OMA Browser, but for 119 Nidovirales species, incl. the human SARS viruses, but also other coronaviruses and other single-stranded RNA viruses
SWISS-MODEL: Three-dimensional homology models and links to experimental structures in PDB for SARS-CoV-2 proteins (updated weekly)
SwissDrugDesign: A large collection of web-based tools covering all aspects of computer-aided drug design (CADD), allowing to design and model compounds tackling COVID-19
V-pipe: Detection of within-host genetic variation of SARS-CoV-2 from viral NGS data
PROSITE: Profiles and patterns for detection and annotation of SARS-CoV-2 proteins and homologs
HAMAP: Family profiles and annotation rules for the detection and annotation of betacoronaviruses
Cellosaurus: Frequently updated information page on the cell lines useful for the study of SARS-CoV-2
neXtProt: Information and SPARQL queries about human proteins that bind SARS-CoV-2
Nextstrain: Real-time tracking of the coronavirus genome evolution and regular reports
COVID-19 Scenarios: Public health planning tool for COVID-19 outbreaks in communities across the world
BEAST2 - COVID-19 Monitoring: Quantifying epidemiological dynamics in real time based on viral genomes and confirmed case data
Computational Linguistics for COVID-19: Central hub in computational linguistics for COVID-19, including automated annotation of the scientific literature, and social media mining
CovidTriage: a search engine developed as part of SIBiLS to rank the COVID-19 literature (Medline, PMC, Cord-19) according to the 9 axis of the COVoc ontology
Protein Spotlight: On light, buds and bursts -
2020-04-24
Nature is bursting into life these days. Every year at this time in the Northern hemisphere, and despite what may be troubling the world - wars, forced migrations, terrorism, earthquakes, locusts or, lately, a virus - spring...More.
New neXtProt app release 2020-04-22 -
2020-04-24
New federated SPARQL query with DisGeNET. More here